ENCFF242SEA

Library Details

Organism: Homo Sapiens
Biosample: body of pancreas (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR033TKS
Description: Part of ENCODE experiment ENCSR033TKS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's pancreas tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 4866.00 1.09 21.12 58.8 MEG8-251 lncRNA body of pancreas (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 426747.00 95.44 1852.42 99.4 MEG8-251 lncRNA body of pancreas (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 3552.00 0.79 15.42 42.99 MEG8-251 lncRNA body of pancreas (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 80.00 0.02 0.35 100.0 MEG8-251 lncRNA body of pancreas (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 5232.00 26.05 22.71 59.41 SNHG14-336 lncRNA body of pancreas (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 13703.00 68.21 59.48 90.19 SNHG14-336 lncRNA body of pancreas (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 886.00 47.38 3.85 90.04 SNHG14-341 lncRNA body of pancreas (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 217.00 3.67 0.94 100.0 NCL-211 retained intron body of pancreas (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 47.00 19.67 0.20 100.0 FMN2-209 protein coding CDS not defined body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 1330.00 4.72 5.77 81.9 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 294.00 1.04 1.28 18.1 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 7968.00 28.27 34.59 100.0 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 1227.00 4.35 5.33 100.0 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 662.00 2.35 2.87 100.0 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 528.00 1.87 2.29 100.0 LINC02739-203 lncRNA body of pancreas (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 747.00 23.51 3.24 100.0 SNHG10-212 lncRNA body of pancreas (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 17604.03 35.13 76.42 36.7 SNHG19-202 lncRNA body of pancreas (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 29964.10 59.80 130.07 71.35 SNHG19-202 lncRNA body of pancreas (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 3568.00 63.74 15.49 100.0 MIR222HG-206 lncRNA body of pancreas (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1433.00 25.60 6.22 87.91 MIR222HG-206 lncRNA body of pancreas (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 33.00 11.15 0.14 100.0 RPSA-216 retained intron body of pancreas (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 2549.00 15.67 11.06 93.92 MIR99AHG-370 lncRNA body of pancreas (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 11860.00 72.90 51.48 97.4 MIR99AHG-370 lncRNA body of pancreas (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 218.00 65.07 0.95 100.0 HPS4-237 retained intron body of pancreas (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 270.00 79.88 1.17 100.0 MEG8-253 lncRNA body of pancreas (Tissue)