ENCFF242SEA

Library Details

Organism: Homo Sapiens
Biosample: body of pancreas (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR033TKS
Description: Part of ENCODE experiment ENCSR033TKS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's pancreas tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 22.00 1.98 0.10 100.0 MEG9-206 lncRNA body of pancreas (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 673.00 60.69 2.92 100.0 MEG9-206 lncRNA body of pancreas (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 279.00 11.96 1.21 100.0 DNAJC5-203 nonsense mediated decay body of pancreas (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 3985.00 17.97 17.30 100.0 ENST00000707189 TEC body of pancreas (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 35612.56 58.31 154.59 65.99 MIR17HG-214 lncRNA body of pancreas (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 687.00 1.12 2.98 100.0 MIR17HG-214 lncRNA body of pancreas (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 19287.89 31.58 83.72 37.11 MIR17HG-214 lncRNA body of pancreas (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 362.00 0.59 1.57 100.0 MIR17HG-214 lncRNA body of pancreas (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 2967.00 4.86 12.88 100.0 MIR17HG-214 lncRNA body of pancreas (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 384.00 0.63 1.67 100.0 MIR17HG-214 lncRNA body of pancreas (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 51.00 0.08 0.22 100.0 MIR17HG-214 lncRNA body of pancreas (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 53.00 0.09 0.23 100.0 MIR17HG-214 lncRNA body of pancreas (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 10426.00 3.98 45.26 100.0 SNHG32-223 lncRNA body of pancreas (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 329.00 0.13 1.43 100.0 SNHG32-223 lncRNA body of pancreas (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 277.00 0.11 1.20 100.0 SNHG32-223 lncRNA body of pancreas (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 3559.00 1.36 15.45 64.16 SNHG32-223 lncRNA body of pancreas (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 242969.00 92.85 1054.68 100.0 SNHG32-223 lncRNA body of pancreas (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 15759.00 89.16 68.41 99.58 SNHG32-227 lncRNA body of pancreas (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 1372.00 7.76 5.96 100.0 SNHG32-227 lncRNA body of pancreas (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 4178.00 85.81 18.14 100.0 B4GALT1-203 nonsense mediated decay body of pancreas (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 869.00 4.42 3.77 100.0 ENST00000722183 lncRNA body of pancreas (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 8902.00 45.31 38.64 90.18 ENST00000722183 lncRNA body of pancreas (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 447.00 2.28 1.94 100.0 ENST00000722183 lncRNA body of pancreas (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 4868.00 64.28 21.13 69.52 THBS3-AS1-228 lncRNA body of pancreas (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 16708.00 81.87 72.53 100.0 MIR200CHG-202 lncRNA body of pancreas (Tissue)