ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385019.1 ENST00000385019.1_6_28_+ 6–28 1.00 3.45 0.01 100.0 MIR199A1-201 miRNA Karpas-422 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 5597.50 49.72 36.95 51.1 MIR93-201 miRNA Karpas-422 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 5464.13 48.54 36.07 58.48 MIR93-201 miRNA Karpas-422 (Cell line)
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 549.00 77.32 3.62 88.69 MIR532-201 miRNA Karpas-422 (Cell line)
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 608.00 87.36 4.01 100.0 MIR15B-201 miRNA Karpas-422 (Cell line)
ENST00000385048.3 ENST00000385048.3_16_37_+ 16–37 44.00 80.00 0.29 100.0 MIR150-201 miRNA Karpas-422 (Cell line)
ENST00000385050.3 ENST00000385050.3_53_74_+ 53–74 4.00 36.36 0.03 100.0 MIR542-201 miRNA Karpas-422 (Cell line)
ENST00000385051.1 ENST00000385051.1_51_71_+ 51–71 33.00 5.63 0.22 100.0 MIR500A-201 miRNA Karpas-422 (Cell line)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 432.00 73.72 2.85 100.0 MIR500A-201 miRNA Karpas-422 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 2.00 0.87 0.01 100.0 MIR30A-201 miRNA Karpas-422 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 54.00 23.58 0.36 100.0 MIR30A-201 miRNA Karpas-422 (Cell line)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 164.00 71.62 1.08 100.0 MIR30A-201 miRNA Karpas-422 (Cell line)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 27848.00 94.50 183.83 95.46 MIR27B-201 miRNA Karpas-422 (Cell line)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 144.00 0.49 0.95 100.0 MIR27B-201 miRNA Karpas-422 (Cell line)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 5.00 100.00 0.03 100.0 MIR196A2-201 miRNA Karpas-422 (Cell line)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 2.00 100.00 0.01 100.0 MIR577-201 miRNA Karpas-422 (Cell line)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 11.00 78.57 0.07 100.0 MIR152-201 miRNA Karpas-422 (Cell line)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 243.00 72.75 1.60 100.0 MIR138-1-201 miRNA Karpas-422 (Cell line)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 3221.00 91.22 21.26 100.0 MIR30C1-201 miRNA Karpas-422 (Cell line)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 107.00 82.31 0.71 100.0 MIR660-201 miRNA Karpas-422 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 60332.86 63.04 398.27 67.28 MIR182-201 miRNA Karpas-422 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 15013.71 15.69 99.11 20.48 MIR182-201 miRNA Karpas-422 (Cell line)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 3782.00 95.17 24.97 100.0 MIR301A-201 miRNA Karpas-422 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 2.00 100.00 0.01 100.0 MIR130A-201 miRNA Karpas-422 (Cell line)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 12317.00 98.65 81.31 99.42 MIRLET7F2-201 miRNA Karpas-422 (Cell line)