ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 195.00 32.18 1.29 100.0 MIR652-201 miRNA Karpas-422 (Cell line)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 2078.00 55.59 13.72 100.0 MIR140-201 miRNA Karpas-422 (Cell line)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 359.00 14.63 2.37 100.0 MIR106B-201 miRNA Karpas-422 (Cell line)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 1120.00 45.64 7.39 77.78 MIR106B-201 miRNA Karpas-422 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 28909.00 20.08 190.83 95.83 SNORD83A-201 snoRNA Karpas-422 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 107375.00 74.59 708.80 98.78 SNORD83A-201 snoRNA Karpas-422 (Cell line)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 236.00 60.98 1.56 100.0 SNORD41-201 snoRNA Karpas-422 (Cell line)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 300.00 1.77 1.98 19.08 MT-TF-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 59.00 0.35 0.39 100.0 MT-TF-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 622.00 3.67 4.11 58.13 MT-TF-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 1488.00 7.38 9.82 100.0 MT-TV-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 365.00 0.42 2.41 82.77 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 32.00 0.04 0.21 100.0 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 10.00 0.01 0.07 100.0 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 422.00 0.49 2.79 87.19 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 11.00 0.01 0.07 100.0 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 200.00 0.23 1.32 100.0 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 42.00 0.05 0.28 100.0 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 4010.00 18.53 26.47 87.77 MT-TI-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 6952.00 32.13 45.89 100.0 MT-TI-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_32_+ 1–32 376770.58 57.51 2487.14 83.04 MT-TQ-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_55_+ 1–55 34240.00 5.23 226.03 100.0 MT-TQ-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_36_+ 1–36 34610.00 5.28 228.47 80.74 MT-TQ-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 94194.56 14.38 621.80 29.49 MT-TQ-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387377.1 ENST00000387377.1_1_31_+ 1–31 28409.00 58.39 187.53 90.92 MT-TM-201 Mt tRNA Karpas-422 (Cell line)