ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 648.00 86.40 4.28 91.27 MIR99B-201 miRNA Karpas-422 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 110.00 45.27 0.73 91.67 MIR23B-201 miRNA Karpas-422 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 98.00 40.33 0.65 85.96 MIR23B-201 miRNA Karpas-422 (Cell line)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 28.00 77.78 0.18 100.0 MIR199B-201 miRNA Karpas-422 (Cell line)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 5.00 13.89 0.03 100.0 MIR199B-201 miRNA Karpas-422 (Cell line)
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 5582.00 96.09 36.85 100.0 MIR30B-201 miRNA Karpas-422 (Cell line)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 8.00 34.78 0.05 100.0 MIR181D-201 miRNA Karpas-422 (Cell line)
ENST00000384858.1 ENST00000384858.1_27_48_+ 27–48 68.00 87.18 0.45 100.0 MIR215-201 miRNA Karpas-422 (Cell line)
ENST00000384863.1 ENST00000384863.1_77_98_+ 77–98 1.00 0.00 0.01 100.0 MIR181A2-201 miRNA Karpas-422 (Cell line)
ENST00000384873.3 ENST00000384873.3_16_38_+ 16–38 193982.00 99.28 1280.51 99.78 MIR191-201 miRNA Karpas-422 (Cell line)
ENST00000384881.1 ENST00000384881.1_27_48_+ 27–48 10.00 90.91 0.07 90.91 MIR181C-201 miRNA Karpas-422 (Cell line)
ENST00000384892.1 ENST00000384892.1_15_36_+ 15–36 295.00 93.06 1.95 100.0 MIR194-1-201 miRNA Karpas-422 (Cell line)
ENST00000384893.1 ENST00000384893.1_52_72_+ 52–72 1642.00 70.05 10.84 72.33 MIR128-2-201 miRNA Karpas-422 (Cell line)
ENST00000384906.1 ENST00000384906.1_13_34_+ 13–34 1.00 100.00 0.01 100.0 MIR99A-201 miRNA Karpas-422 (Cell line)
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 918.00 5.30 6.06 83.08 MIR28-201 miRNA Karpas-422 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_71_+ 54–71 93.00 0.54 0.61 100.0 MIR28-201 miRNA Karpas-422 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_75_+ 54–75 15249.00 88.06 100.66 95.82 MIR28-201 miRNA Karpas-422 (Cell line)
ENST00000384958.1 ENST00000384958.1_27_48_+ 27–48 5890.00 72.88 38.88 100.0 MIR183-201 miRNA Karpas-422 (Cell line)
ENST00000384988.1 ENST00000384988.1_15_36_+ 15–36 30985.00 97.15 204.54 98.52 MIR186-201 miRNA Karpas-422 (Cell line)
ENST00000384997.3 ENST00000384997.3_57_79_+ 57–79 20.00 95.24 0.13 100.0 MIR200B-201 miRNA Karpas-422 (Cell line)
ENST00000385004.1 ENST00000385004.1_16_38_+ 16–38 7129.00 93.23 47.06 96.52 MIR181B2-201 miRNA Karpas-422 (Cell line)
ENST00000385011.1 ENST00000385011.1_27_48_+ 27–48 83.00 85.57 0.55 87.37 MIR10B-201 miRNA Karpas-422 (Cell line)
ENST00000385018.1 ENST00000385018.1_13_34_+ 13–34 408.00 8.41 2.69 100.0 MIR130B-201 miRNA Karpas-422 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_73_+ 51–73 1974.02 40.68 13.03 51.39 MIR130B-201 miRNA Karpas-422 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_71_+ 51–71 2009.49 41.41 13.27 47.46 MIR130B-201 miRNA Karpas-422 (Cell line)