ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 2769.00 12.24 18.28 94.44 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 1123.00 4.96 7.41 100.0 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 2492.00 11.01 16.45 84.1 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 4229.50 18.69 27.92 58.31 SNORD82-201 snoRNA Karpas-422 (Cell line)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 3373.00 95.47 22.27 97.15 MIR146B-201 miRNA Karpas-422 (Cell line)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 103.00 9.17 0.68 100.0 SNHG20-201 lncRNA Karpas-422 (Cell line)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 390.00 17.40 2.57 100.0 ATP5MK-205 protein coding Karpas-422 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 141.00 6.29 0.93 100.0 ATP5MK-205 protein coding Karpas-422 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 6.00 4.88 0.04 100.0 LINC01556-201 lncRNA Karpas-422 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 141.00 54.86 0.93 100.0 ATAD3A-202 protein coding Karpas-422 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 131.00 33.16 0.86 71.2 TMC5-202 protein coding Karpas-422 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 1103.00 79.99 7.28 100.0 ZMYM2-203 protein coding Karpas-422 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 69.00 0.36 0.46 100.0 RNVU1-7-201 snRNA Karpas-422 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 20204.00 90.04 133.37 100.0 SNORD24-201 snoRNA Karpas-422 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 10924.00 92.87 72.11 100.0 Y_RNA.389-201 misc RNA Karpas-422 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 293.00 0.19 1.93 100.0 SNORD101-201 snoRNA Karpas-422 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 137171.00 89.38 905.49 98.96 SNORD101-201 snoRNA Karpas-422 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 414.00 0.27 2.73 100.0 SNORD101-201 snoRNA Karpas-422 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 7336.00 4.78 48.43 72.19 SNORD101-201 snoRNA Karpas-422 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 216919.00 96.66 1431.93 100.0 SNORD37-201 snoRNA Karpas-422 (Cell line)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 32330.00 71.84 213.42 95.55 SNORD59A-201 snoRNA Karpas-422 (Cell line)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 26.00 3.87 0.17 100.0 SNORA7B-201 snoRNA Karpas-422 (Cell line)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 1219.00 78.85 8.05 100.0 SNORD14D-201 snoRNA Karpas-422 (Cell line)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 677.00 9.57 4.47 100.0 Y_RNA.555-201 misc RNA Karpas-422 (Cell line)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 17886.00 92.57 118.07 94.33 MIR25-201 miRNA Karpas-422 (Cell line)