ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 742.00 17.50 4.90 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 46.00 1.09 0.30 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 96.00 19.55 0.63 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 330.00 73.83 2.18 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 81.00 25.80 0.53 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 652.00 2.26 4.30 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 225.00 0.78 1.49 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 114.00 0.39 0.75 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 51.00 0.18 0.34 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 5.00 0.02 0.03 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 168.00 0.58 1.11 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 42.00 0.01 0.28 76.36 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 58.00 0.01 0.38 65.91 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 8495.00 1.44 56.08 95.22 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 887.00 12.90 5.86 70.9 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 8559.00 86.81 56.50 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 14.00 2.36 0.09 53.85 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 6.00 75.00 0.04 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 414.00 0.79 2.73 39.02 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 647.00 1.23 4.27 60.98 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 20629.00 39.26 136.18 57.72 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 622.00 10.17 4.11 67.24 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 2347.00 38.37 15.49 90.76 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 512.47 8.38 3.38 20.83 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 28285.00 83.96 186.72 89.83 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA Karpas-422 (Cell line)