ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 609.00 1.18 4.02 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 2433.00 4.70 16.06 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 449.00 0.87 2.96 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 3123.00 6.03 20.62 62.51 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 2090.00 4.04 13.80 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 546.00 6.92 3.60 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 1592.00 20.18 10.51 62.53 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 296.00 3.96 1.95 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 9030.00 51.76 59.61 93.35 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 10.00 0.06 0.07 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 15.00 0.09 0.10 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 128.00 0.73 0.84 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 1110.00 6.36 7.33 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 163.00 2.27 1.08 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 9993.00 27.47 65.97 45.97 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 24.00 0.36 0.16 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 8.00 0.13 0.05 29.63 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 655.00 10.24 4.32 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 21.00 0.33 0.14 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 2043.00 31.94 13.49 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 220.00 0.04 1.45 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 94.00 8.33 0.62 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 166.00 20.54 1.10 87.37 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_13_+ 1–13 18.00 2.23 0.12 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 24.00 2.97 0.16 12.63 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA Karpas-422 (Cell line)