ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 1321.00 0.75 8.72 100.0 GAS5-377 lncRNA Karpas-422 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 147371.00 83.39 972.83 100.0 GAS5-377 lncRNA Karpas-422 (Cell line)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 2509.00 20.40 16.56 100.0 TAF12-DT-204 lncRNA Karpas-422 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 153.00 0.15 1.01 100.0 ZFAS1-238 lncRNA Karpas-422 (Cell line)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 91680.00 92.39 605.20 99.72 ZFAS1-238 lncRNA Karpas-422 (Cell line)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 302.00 0.30 1.99 100.0 ZFAS1-238 lncRNA Karpas-422 (Cell line)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 2005.00 2.02 13.24 100.0 ZFAS1-238 lncRNA Karpas-422 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 606.00 3.26 4.00 100.0 ZFAS1-242 lncRNA Karpas-422 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 17186.00 92.44 113.45 100.0 ZFAS1-242 lncRNA Karpas-422 (Cell line)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 182.00 43.54 1.20 100.0 ENST00000837997 lncRNA Karpas-422 (Cell line)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 73.00 17.46 0.48 100.0 ENST00000837997 lncRNA Karpas-422 (Cell line)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 919.00 75.76 6.07 84.62 ENST00000839036 lncRNA Karpas-422 (Cell line)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 137.00 15.84 0.90 100.0 ENST00000849527 lncRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 76.00 0.65 0.50 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 8675.00 74.52 57.27 91.2 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 321.00 1.08 2.12 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 1143.00 82.89 7.55 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 12.00 0.87 0.08 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 180.00 9.00 1.19 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 5.00 0.39 0.03 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 1161.00 43.24 7.66 80.74 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 800.00 2.70 5.28 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 559.00 8.13 3.69 89.15 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 220.00 3.20 1.45 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 643.00 9.35 4.24 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA Karpas-422 (Cell line)