ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 1769.00 21.34 11.68 100.0 ENST00000785178 lncRNA Karpas-422 (Cell line)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 2269.00 32.56 14.98 66.31 ENST00000786284 lncRNA Karpas-422 (Cell line)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 924.00 13.26 6.10 100.0 ENST00000786284 lncRNA Karpas-422 (Cell line)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 1153.00 16.54 7.61 83.85 ENST00000786284 lncRNA Karpas-422 (Cell line)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 30948.00 80.76 204.29 92.09 ENST00000788343 lncRNA Karpas-422 (Cell line)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 5354.63 20.36 35.35 39.01 ENST00000797550 lncRNA Karpas-422 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 4976.01 18.92 32.85 36.26 ENST00000797550 lncRNA Karpas-422 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 7503.00 28.52 49.53 98.34 ENST00000797550 lncRNA Karpas-422 (Cell line)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 117659.00 90.34 776.69 96.69 MIR181A1HG-212 lncRNA Karpas-422 (Cell line)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 422.00 0.32 2.79 100.0 MIR181A1HG-212 lncRNA Karpas-422 (Cell line)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 5385.00 46.79 35.55 100.0 C19orf48P-218 lncRNA Karpas-422 (Cell line)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 3416.00 29.68 22.55 100.0 C19orf48P-218 lncRNA Karpas-422 (Cell line)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 152.00 20.62 1.00 100.0 ENST00000817026 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 542.00 0.83 3.58 100.0 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 1437.14 2.19 9.49 30.99 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 2375.03 3.62 15.68 34.23 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 181.00 0.28 1.19 100.0 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 2947.00 4.50 19.45 99.23 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 4016.82 6.13 26.52 39.21 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 5430.36 8.29 35.85 47.34 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 601.00 0.92 3.97 84.29 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 8372.93 12.78 55.27 33.42 ENST00000823279 lncRNA Karpas-422 (Cell line)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 20701.28 31.59 136.65 81.92 ENST00000823801 lncRNA Karpas-422 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 275.00 0.16 1.82 100.0 GAS5-377 lncRNA Karpas-422 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 23303.00 13.19 153.83 100.0 GAS5-377 lncRNA Karpas-422 (Cell line)