ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 737.00 0.14 4.87 67.37 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 247.00 0.05 1.63 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 108.00 0.02 0.71 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 264.00 0.05 1.74 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 1298.00 20.17 8.57 100.0 SNHG14-315 lncRNA Karpas-422 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 594.00 9.23 3.92 93.1 SNHG14-315 lncRNA Karpas-422 (Cell line)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 1113.00 17.30 7.35 85.55 SNHG14-315 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1203.00 0.33 7.94 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 72418.07 19.59 478.05 26.36 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 418.00 0.11 2.76 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 450.00 0.12 2.97 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 240158.48 64.96 1585.33 77.58 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 9980.00 2.70 65.88 65.14 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 227.00 0.06 1.50 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 6698.00 1.81 44.21 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 165.00 0.04 1.09 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1.00 0.00 0.01 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 18224.00 4.93 120.30 92.03 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 32.00 0.75 0.21 62.75 SNHG14-323 lncRNA Karpas-422 (Cell line)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 1.00 14.29 0.01 100.0 MEG8-251 lncRNA Karpas-422 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 630.00 30.57 4.16 90.13 SNHG14-336 lncRNA Karpas-422 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 295.00 14.31 1.95 37.25 SNHG14-336 lncRNA Karpas-422 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 385.00 27.04 2.54 89.12 SNHG14-341 lncRNA Karpas-422 (Cell line)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 43.00 1.15 0.28 100.0 NCL-211 retained intron Karpas-422 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 10927.00 69.26 72.13 100.0 FMN2-209 protein coding CDS not defined Karpas-422 (Cell line)