ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 93.40 0.02 0.62 52.77 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1510.00 0.28 9.97 88.67 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 122525.00 22.75 808.81 98.23 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 144.00 0.03 0.95 62.34 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 46501.00 8.63 306.96 99.72 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 2671.00 0.50 17.63 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 97451.00 18.09 643.29 98.68 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 7.00 0.00 0.05 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 622.00 0.12 4.11 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1441.00 0.27 9.51 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 213.00 0.04 1.41 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 86.00 0.02 0.57 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 159.00 0.03 1.05 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 8645.00 1.61 57.07 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 694.00 0.13 4.58 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 652.00 0.12 4.30 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 192873.00 35.81 1273.19 96.74 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 141.00 0.03 0.93 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 10363.00 1.92 68.41 96.53 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 310.00 0.06 2.05 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 37.00 0.01 0.24 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 6552.00 1.22 43.25 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 928.00 0.17 6.13 81.83 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 77.33 0.01 0.51 43.69 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 85.00 0.02 0.56 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)