ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 6471.00 1.53 42.72 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 13277.00 3.14 87.64 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 532.00 0.13 3.51 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 162.00 8.69 1.07 100.0 FTX-219 lncRNA Karpas-422 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 1095.00 58.71 7.23 81.29 FTX-219 lncRNA Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 1242.00 11.98 8.20 27.48 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 348.00 3.36 2.30 66.54 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 447.00 4.31 2.95 55.6 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 3277.00 31.61 21.63 72.52 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 753.00 7.26 4.97 88.38 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 269.00 2.59 1.78 100.0 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 341.00 3.29 2.25 100.0 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 418.00 4.03 2.76 100.0 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 431.00 0.73 2.85 73.42 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 790.00 1.34 5.21 99.5 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 480.00 0.81 3.17 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 1488.00 2.52 9.82 37.31 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 106.00 0.18 0.70 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 312.00 0.53 2.06 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 3227.00 5.46 21.30 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 99.00 0.17 0.65 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 581.00 0.98 3.84 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 39000.00 65.95 257.45 96.97 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 1709.00 2.89 11.28 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 2428.00 4.11 16.03 43.95 ENST00000651540 lncRNA Karpas-422 (Cell line)