ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 84.00 9.13 0.55 91.3 MIR23AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 28.00 3.04 0.18 63.64 MIR23AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 24.00 43.64 0.16 100.0 ODAD3-204 nonsense mediated decay Karpas-422 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 633.00 6.48 4.18 100.0 VMP1-217 retained intron Karpas-422 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 66.00 0.68 0.44 100.0 VMP1-217 retained intron Karpas-422 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 6060.00 61.99 40.00 69.9 VMP1-217 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 2918.00 0.11 19.26 100.0 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1162734.71 43.65 7675.45 51.02 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1451158.88 54.48 9579.39 56.87 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 63655.00 2.39 420.20 86.92 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 1432.00 0.05 9.45 100.0 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 13.00 0.00 0.09 100.0 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 145.00 6.53 0.96 100.0 RPS11-206 retained intron Karpas-422 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 383.00 17.26 2.53 100.0 RPS11-206 retained intron Karpas-422 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 26.00 78.79 0.17 92.86 CARMN-209 lncRNA Karpas-422 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 3162.00 23.39 20.87 100.0 ENST00000602478 lncRNA Karpas-422 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 18.00 11.84 0.12 100.0 PPFIA1P1-201 processed pseudogene Karpas-422 (Cell line)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 1.00 3.70 0.01 100.0 SNORD115-40-201 snoRNA Karpas-422 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 461.00 96.85 3.04 100.0 MIR98-201 miRNA Karpas-422 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 2254.00 96.78 14.88 100.0 MIR15A-201 miRNA Karpas-422 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 709.00 42.79 4.68 100.0 SNHG21-206 retained intron Karpas-422 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 194.00 40.93 1.28 100.0 SNORD11B-201 snoRNA Karpas-422 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 3697.00 71.00 24.40 100.0 SNORD91B-201 snoRNA Karpas-422 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 23153.00 76.65 152.84 92.06 SNORD91A-201 snoRNA Karpas-422 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 84.00 43.52 0.55 97.67 MIR486-1-201 miRNA Karpas-422 (Cell line)