ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 11117.00 25.00 73.39 52.23 MIR142HG-201 lncRNA Karpas-422 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 594.00 1.20 3.92 100.0 SNORD3C-201 snoRNA Karpas-422 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 12.47 0.02 0.08 73.36 RPL23A-208 retained intron Karpas-422 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 4.50 0.01 0.03 40.87 RPL23A-208 retained intron Karpas-422 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 41112.00 60.85 271.39 69.81 RPL23A-208 retained intron Karpas-422 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 24558.00 36.35 162.11 85.78 RPL23A-208 retained intron Karpas-422 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 344.00 0.26 2.27 21.16 RPL17-211 retained intron Karpas-422 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 847.00 0.64 5.59 6.69 RPL17-211 retained intron Karpas-422 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 3459.00 2.63 22.83 100.0 RPL17-211 retained intron Karpas-422 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 95326.00 72.56 629.27 99.42 RPL17-211 retained intron Karpas-422 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 14067.00 10.71 92.86 98.94 RPL17-211 retained intron Karpas-422 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1313.00 3.74 8.67 100.0 RPL17-214 retained intron Karpas-422 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 9570.07 27.27 63.17 45.11 RPL17-214 retained intron Karpas-422 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 13954.34 39.77 92.12 59.82 RPL17-214 retained intron Karpas-422 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 166.00 0.02 1.10 100.0 SNORD43-201 snoRNA Karpas-422 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 839185.00 99.03 5539.63 99.81 SNORD43-201 snoRNA Karpas-422 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 395.00 0.05 2.61 100.0 SNORD43-201 snoRNA Karpas-422 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 223.00 70.57 1.47 100.0 MIR151B-201 miRNA Karpas-422 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 5577.00 10.63 36.81 100.0 SNORD3A-201 snoRNA Karpas-422 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 2148.00 37.54 14.18 100.0 SNORD92-201 snoRNA Karpas-422 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 5622.00 39.69 37.11 100.0 NSRP1-214 protein coding Karpas-422 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 5821.00 41.10 38.43 81.77 NSRP1-214 protein coding Karpas-422 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 13.00 1.41 0.09 100.0 MIR23AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 38.00 4.13 0.25 88.37 MIR23AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 238.00 25.87 1.57 83.22 MIR23AHG-201 lncRNA Karpas-422 (Cell line)