ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 263.00 0.83 1.74 100.0 ENST00000563103 lncRNA Karpas-422 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 33418.00 75.62 220.60 100.0 RPL4-207 retained intron Karpas-422 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 977.00 2.21 6.45 100.0 RPL4-207 retained intron Karpas-422 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 28899.00 67.43 190.77 87.39 ENST00000565336 lncRNA Karpas-422 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 5289.00 12.34 34.91 66.37 ENST00000565336 lncRNA Karpas-422 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1672.00 2.75 11.04 100.0 RBMX-210 retained intron Karpas-422 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 84.00 0.14 0.55 100.0 RBMX-210 retained intron Karpas-422 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 1773.00 2.92 11.70 100.0 RBMX-210 retained intron Karpas-422 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 54004.00 88.89 356.49 99.21 RBMX-210 retained intron Karpas-422 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 5456.00 44.11 36.02 100.0 RPL4-214 retained intron Karpas-422 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 787.00 6.36 5.20 100.0 RPL4-214 retained intron Karpas-422 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 3044.42 23.35 20.10 45.06 POLG-DT-202 lncRNA Karpas-422 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 4909.31 37.65 32.41 71.89 POLG-DT-202 lncRNA Karpas-422 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 297.00 2.28 1.96 100.0 POLG-DT-202 lncRNA Karpas-422 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 643.00 25.31 4.24 100.0 ENST00000570843 lncRNA Karpas-422 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 3015.00 98.69 19.90 99.34 MIR22HG-212 lncRNA Karpas-422 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 141.00 0.23 0.93 17.54 SNORD53B-201 snoRNA Karpas-422 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 42153.00 69.12 278.26 72.93 SNORD53B-201 snoRNA Karpas-422 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 663.00 1.09 4.38 82.46 SNORD53B-201 snoRNA Karpas-422 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 71.00 35.15 0.47 100.0 ENST00000578036 lncRNA Karpas-422 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 6811.00 82.53 44.96 100.0 RPL23A-207 protein coding Karpas-422 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 813.00 95.31 5.37 100.0 MIR744-201 miRNA Karpas-422 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 804.00 86.54 5.31 100.0 MIR378C-201 miRNA Karpas-422 (Cell line)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 517.00 1.16 3.41 100.0 MIR142HG-201 lncRNA Karpas-422 (Cell line)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 22352.00 50.26 147.55 76.33 MIR142HG-201 lncRNA Karpas-422 (Cell line)