ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 1069.00 0.36 7.06 100.0 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 690.00 0.23 4.55 95.17 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 6.00 0.00 0.04 100.0 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 639.00 26.57 4.22 100.0 HSPA8-211 retained intron Karpas-422 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1242.00 11.31 8.20 100.0 SCARNA9-201 lncRNA Karpas-422 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 376195.00 95.31 2483.34 100.0 TAF1D-215 retained intron Karpas-422 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 157.00 0.04 1.04 100.0 TAF1D-215 retained intron Karpas-422 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 50.00 0.63 0.33 100.0 HSPA8-215 retained intron Karpas-422 (Cell line)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 147.00 1.84 0.97 100.0 HSPA8-215 retained intron Karpas-422 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 5054.00 63.40 33.36 100.0 HSPA8-215 retained intron Karpas-422 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1196.00 22.14 7.90 100.0 RPS2-215 retained intron Karpas-422 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 1821.00 91.88 12.02 92.44 ENST00000548801 lncRNA Karpas-422 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 2321.00 15.47 15.32 100.0 ENST00000554988 lncRNA Karpas-422 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 4936.00 32.90 32.58 100.0 ENST00000554988 lncRNA Karpas-422 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 96.00 0.64 0.63 100.0 ENST00000554988 lncRNA Karpas-422 (Cell line)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 356.00 3.36 2.35 100.0 SNHG14-220 retained intron Karpas-422 (Cell line)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 73.00 0.69 0.48 100.0 SNHG14-220 retained intron Karpas-422 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 921.00 8.68 6.08 100.0 SNHG14-220 retained intron Karpas-422 (Cell line)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 8167.00 77.00 53.91 100.0 SNHG14-220 retained intron Karpas-422 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 940.00 99.26 6.21 100.0 TEKT4P2-201 transcribed unprocessed pseudogene Karpas-422 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1064.00 1.32 7.02 100.0 RPL4-202 retained intron Karpas-422 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 69.00 0.09 0.46 100.0 RPL4-202 retained intron Karpas-422 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 69.00 0.09 0.46 100.0 RPL4-202 retained intron Karpas-422 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 362.00 0.45 2.39 100.0 RPL4-202 retained intron Karpas-422 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 73712.00 91.46 486.59 98.83 RPL4-202 retained intron Karpas-422 (Cell line)