ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 457.00 48.67 3.02 100.0 SNORD121A-201 snoRNA Karpas-422 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 2052.00 27.83 13.55 51.52 SNORD126-201 snoRNA Karpas-422 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 4247.00 57.59 28.04 81.91 SNORD126-201 snoRNA Karpas-422 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 20514.00 89.62 135.42 93.59 SNORD124-201 snoRNA Karpas-422 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 56.00 3.72 0.37 100.0 SNHG12-201 retained intron Karpas-422 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 876.00 17.98 5.78 100.0 RPL3-212 retained intron Karpas-422 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 1907.00 39.14 12.59 90.34 RPL3-212 retained intron Karpas-422 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 13293.00 98.02 87.75 100.0 SMC1A-204 retained intron Karpas-422 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 109533.00 92.89 723.05 99.75 RABGGTB-208 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 136.00 5.03 0.90 82.93 DDX39B-219 retained intron Karpas-422 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 325.00 12.03 2.15 100.0 DDX39B-219 retained intron Karpas-422 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 401.00 14.84 2.65 100.0 DDX39B-219 retained intron Karpas-422 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 6240.00 78.01 41.19 100.0 RPS8-206 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 12224.00 77.07 80.69 99.9 RPL13-207 retained intron Karpas-422 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 419.00 2.64 2.77 100.0 RPL13-207 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 773637.00 54.23 5106.93 97.72 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 7395.00 0.52 48.82 100.0 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 4600.00 0.32 30.37 57.65 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 2.00 0.00 0.01 100.0 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 73.00 0.01 0.48 100.0 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 5938.00 0.42 39.20 72.08 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 3319.00 0.23 21.91 69.09 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2749.00 0.19 18.15 47.68 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 2772.00 0.19 18.30 100.0 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1867.00 0.13 12.32 48.93 EIF4A2-219 retained intron Karpas-422 (Cell line)