ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 57.00 0.16 0.38 100.0 SNORD71-201 snoRNA Karpas-422 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 12616.00 80.41 83.28 94.14 MIR194-2HG-201 lncRNA Karpas-422 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 2636.00 16.80 17.40 69.26 MIR194-2HG-201 lncRNA Karpas-422 (Cell line)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 69.00 1.14 0.46 100.0 LINC01783-201 lncRNA Karpas-422 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 10.00 12.05 0.07 100.0 RPS7P15-201 processed pseudogene Karpas-422 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 175.00 0.92 1.16 100.0 SNORD62B-201 snoRNA Karpas-422 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 199.00 1.05 1.31 100.0 SNORD62B-201 snoRNA Karpas-422 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 10574.00 55.54 69.80 75.38 SNORD62B-201 snoRNA Karpas-422 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 302.00 1.59 1.99 100.0 SNORD62B-201 snoRNA Karpas-422 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 192.00 1.01 1.27 100.0 SNORD62B-201 snoRNA Karpas-422 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 1079.00 96.68 7.12 100.0 MRPL32-203 nonsense mediated decay Karpas-422 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 346.00 97.74 2.28 100.0 ENST00000436739 lncRNA Karpas-422 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 8281.00 41.35 54.66 100.0 TMEM107-204 protein coding Karpas-422 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 120.00 0.60 0.79 22.26 TMEM107-204 protein coding Karpas-422 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 705.00 3.52 4.65 51.35 TMEM107-204 protein coding Karpas-422 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 462.00 2.31 3.05 100.0 TMEM107-204 protein coding Karpas-422 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 276.00 16.30 1.82 62.3 SNHG16-201 lncRNA Karpas-422 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 387.00 22.86 2.55 100.0 SNHG16-201 lncRNA Karpas-422 (Cell line)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 3.00 8.57 0.02 100.0 SNHG14-207 lncRNA Karpas-422 (Cell line)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 45905.00 95.73 303.03 98.37 SNORD105B-201 snoRNA Karpas-422 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 3417.00 71.61 22.56 94.84 SNORD121B-201 snoRNA Karpas-422 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 52.00 0.09 0.34 100.0 SNORD127-201 snoRNA Karpas-422 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 53946.00 93.58 356.11 99.47 SNORD127-201 snoRNA Karpas-422 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 24495.00 85.98 161.70 100.0 SNORD42B-201 snoRNA Karpas-422 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 12637.00 46.46 83.42 100.0 RNY4P25-201 misc RNA Karpas-422 (Cell line)