ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 276.00 0.26 0.21 100.0 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 9609.00 9.20 7.16 100.0 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 5438.00 67.15 4.05 100.0 SNORD14C-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 2787.00 57.77 2.08 100.0 SNORD115-44-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 1608.00 73.22 1.20 100.0 RNA5SP77-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 7016.00 43.04 5.23 100.0 SNORD114-22-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 7745.00 47.51 5.77 89.72 SNORD114-22-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 1262.00 1.52 0.94 100.0 SNORD6-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 77480.00 93.33 57.75 100.0 SNORD6-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 2722.00 6.23 2.03 100.0 RNY3-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 15764.00 28.67 11.75 99.46 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 2116.00 3.85 1.58 100.0 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 5550.00 10.09 4.14 79.21 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 9344.56 16.99 6.96 41.62 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 13839.63 25.17 10.32 61.64 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 1853.00 3.37 1.38 100.0 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 1238.00 2.25 0.92 100.0 SNORD82-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 379969.00 96.81 283.21 97.86 MIR146B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 22.00 4.84 0.02 100.0 SNHG20-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 202.00 23.71 0.15 100.0 ATP5MK-205 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 77.00 9.04 0.06 100.0 ATP5MK-205 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 84.00 13.19 0.06 100.0 LINC01556-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 241.00 29.90 0.18 100.0 ATAD3A-202 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 92.00 22.12 0.07 53.49 TMC5-202 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 739.00 39.58 0.55 100.0 ZMYM2-203 protein coding smooth muscle cell (In vitro differentiated cells)