ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 605.00 41.02 0.45 100.0 ENST00000364722 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364809.1 ENST00000364809.1_2_81_+ 2–81 3777.00 48.17 2.82 100.0 SNORD115-15-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364830.3 ENST00000364830.3_3_67_+ 3–67 99.00 30.46 0.07 100.0 SNORD113-3-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 51533.00 90.57 38.41 100.0 SNORD52-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 16098.00 59.46 12.00 82.26 SNORD117-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 3471.00 12.82 2.59 21.98 SNORD117-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 5713.00 85.69 4.26 95.11 SNORD114-3-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364969.1 ENST00000364969.1_38_71_+ 38–71 108.00 1.62 0.08 100.0 SNORD114-3-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364969.1 ENST00000364969.1_4_62_+ 4–62 202.00 3.03 0.15 100.0 SNORD114-3-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 52.00 3.32 0.04 100.0 RNA5SP298-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000365037.1 ENST00000365037.1_2_82_+ 2–82 2505.00 56.66 1.87 100.0 SNORD115-38-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365073.1 ENST00000365073.1_2_81_+ 2–81 4888.00 51.54 3.64 100.0 SNORD115-10-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365080.1 ENST00000365080.1_3_67_+ 3–67 987.00 87.42 0.74 100.0 SNORD113-9-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365099.1 ENST00000365099.1_2_82_+ 2–82 451.00 35.54 0.34 100.0 SNORD115-20-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 47857.00 87.94 35.67 100.0 SNORD38A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 3678.00 6.76 2.74 100.0 SNORD38A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 518.00 0.95 0.39 100.0 SNORD38A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 2842.00 83.12 2.12 93.55 SNORD114-20-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 10288.00 9.85 7.67 79.63 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 6835.00 6.54 5.09 100.0 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 276.00 0.26 0.21 100.0 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 9609.00 9.20 7.16 100.0 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 479.00 0.46 0.36 95.04 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 8680.00 8.31 6.47 100.0 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 11511.00 11.02 8.58 81.39 7SK.1-201 misc RNA smooth muscle cell (In vitro differentiated cells)