ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 2015.00 90.32 1.50 100.0 SNORD114-14-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 561.00 2.98 0.42 100.0 SNORD104-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 69.00 0.37 0.05 100.0 SNORD104-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 11163.00 68.01 8.32 95.93 SNORD115-9-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 91988.00 85.53 68.56 96.74 RNA5SP358-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 217.00 1.75 0.16 80.67 RNA5SP145-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 10.00 19.61 0.01 100.0 Y_RNA.105-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 36.00 2.32 0.03 100.0 RNY4P9-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 5242.00 26.17 3.91 100.0 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 820.00 4.09 0.61 100.0 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 140.00 0.70 0.10 100.0 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 146.00 0.73 0.11 100.0 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 105.00 0.52 0.08 54.4 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 9.00 0.04 0.01 100.0 RNU5B-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 56474.00 95.99 42.09 98.7 SNORD115-18-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 16.00 0.56 0.01 72.73 RNY4P27-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 167.00 5.81 0.12 96.53 RNY4P27-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 7138.00 23.96 5.32 100.0 Y_RNA.136-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000363608.1 ENST00000363608.1_2_82_+ 2–82 6972.00 73.18 5.20 100.0 SNORD115-41-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363633.1 ENST00000363633.1_2_82_+ 2–82 178.00 6.48 0.13 100.0 SNORD115-5-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363723.1 ENST00000363723.1_2_82_+ 2–82 1263.00 46.11 0.94 100.0 SNORD115-33-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 3165.00 84.18 2.36 92.03 SNORD114-25-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 7482.00 91.74 5.58 100.0 SNORD113-7-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363856.1 ENST00000363856.1_2_82_+ 2–82 2995.00 50.69 2.23 100.0 SNORD115-8-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 5142.00 65.24 3.83 100.0 Y_RNA.181-201 misc RNA smooth muscle cell (In vitro differentiated cells)