ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 6311.33 0.26 4.70 59.1 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 724.00 12.67 0.54 100.0 Y_RNA.14-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000362441.1 ENST00000362441.1_2_82_+ 2–82 1614.00 38.30 1.20 100.0 SNORD115-34-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 111.00 3.17 0.08 100.0 RNU5E-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 304.00 2.47 0.23 27.05 RNA5SP370-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 13406.00 55.71 9.99 100.0 SNORA31-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 500.00 4.06 0.37 100.0 RNA5SP389-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 316.00 2.56 0.24 38.92 RNA5SP389-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 81.00 0.66 0.06 100.0 RNA5SP389-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 325.00 2.64 0.24 62.98 RNA5SP389-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 15212.00 9.98 11.34 78.96 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 512.00 0.34 0.38 100.0 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 3308.94 2.17 2.47 52.18 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 29292.00 19.22 21.83 81.97 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 5212.00 3.42 3.88 35.96 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 8385.00 5.50 6.25 100.0 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 12082.00 7.93 9.01 76.31 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 2543.00 1.67 1.90 32.72 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 4569.78 3.00 3.41 46.59 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 3982.00 2.61 2.97 57.15 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 34.00 0.02 0.03 100.0 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 4314.76 2.83 3.22 74.47 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 6285.65 4.13 4.68 54.0 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 5745.00 3.77 4.28 38.77 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 8705.00 5.71 6.49 76.07 RNU5A-1-201 snRNA smooth muscle cell (In vitro differentiated cells)