ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363887.1 ENST00000363887.1_2_82_+ 2–82 2632.00 50.59 1.96 100.0 SNORD115-16-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364079.1 ENST00000364079.1_2_82_+ 2–82 1699.00 49.05 1.27 100.0 SNORD115-32-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364117.1 ENST00000364117.1_2_82_+ 2–82 1547.00 48.34 1.15 100.0 SNORD115-30-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 466.40 1.62 0.35 23.03 RNY1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 5041.00 17.49 3.76 100.0 RNY1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 204.00 0.71 0.15 100.0 RNY1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 389.00 1.35 0.29 100.0 RNY1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 2131.31 7.40 1.59 77.45 RNY1-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364273.1 ENST00000364273.1_2_82_+ 2–82 2860.00 44.20 2.13 100.0 SNORD115-42-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 3648.77 1.85 2.72 34.49 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 792.00 0.40 0.59 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 4040.00 2.05 3.01 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 933.00 0.47 0.70 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 327.00 0.17 0.24 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 18400.06 9.32 13.71 64.91 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 635.00 0.32 0.47 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 21124.04 10.70 15.74 64.91 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 829.00 0.42 0.62 100.0 RNA5SP202-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 1276.00 35.29 0.95 100.0 SNORD114-9-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 1491.00 41.23 1.11 100.0 SNORD114-9-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 3639.00 6.17 2.71 100.0 Y_RNA.234-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 1150.00 0.96 0.86 100.0 RNA5S9-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364461.1 ENST00000364461.1_2_82_+ 2–82 2441.00 79.15 1.82 100.0 SNORD115-23-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 331.00 4.18 0.25 100.0 RNA5SP141-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000364687.1 ENST00000364687.1_34_67_+ 34–67 134.00 36.12 0.10 100.0 SNORD114-15-201 snoRNA smooth muscle cell (In vitro differentiated cells)