ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 261.00 0.01 0.19 71.51 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 25237.00 33.04 18.81 78.55 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 1335.00 86.30 1.00 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 311.00 5.05 0.23 87.85 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 1159.00 94.54 0.86 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 9906.00 5.68 7.38 82.53 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 2097.00 1.20 1.56 17.47 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 112712.00 64.68 84.01 89.06 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 2275.28 8.04 1.70 27.13 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 7709.00 27.22 5.75 75.04 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 7242.96 25.58 5.40 86.7 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 112778.00 87.55 84.06 91.93 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 60.00 0.77 0.04 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 9936.00 10.63 7.41 60.18 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 4060.00 0.34 3.03 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 2330.00 0.40 1.74 57.55 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 337.00 24.83 0.25 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 3670.00 24.22 2.74 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 1215383.00 96.07 905.88 98.56 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 53.00 0.02 0.04 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 17500.00 6.89 13.04 27.21 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 1012.00 61.78 0.75 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 8.00 0.06 0.01 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 1841.00 47.11 1.37 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 176101.00 95.11 131.26 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA smooth muscle cell (In vitro differentiated cells)