ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 3240.00 4.08 2.41 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 7484.00 23.73 5.58 62.08 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 659.00 0.98 0.49 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 4826.00 27.63 3.60 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 1464.00 8.38 1.09 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 44.00 0.25 0.03 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 1354.00 7.75 1.01 86.57 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 1966.00 0.09 1.47 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 1293.00 48.00 0.96 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 371.00 8.30 0.28 55.62 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_13_+ 1–13 288.00 6.44 0.21 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 296.00 6.62 0.22 44.38 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 4484.00 22.81 3.34 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 137.00 0.70 0.10 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 600.00 35.17 0.45 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 2009.00 63.82 1.50 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 63.00 4.86 0.05 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 1639.00 0.77 1.22 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 40.00 0.02 0.03 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 1010.00 0.47 0.75 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 4749.00 2.22 3.54 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 959.00 0.45 0.71 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 909.00 0.42 0.68 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 374240.00 17.02 278.94 97.29 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 426.00 0.02 0.32 61.56 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA smooth muscle cell (In vitro differentiated cells)