ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362283.1 ENST00000362283.1_6_21_+ 6–21 1126.00 6.71 0.84 100.0 MIR30D-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362283.1 ENST00000362283.1_6_29_+ 6–29 13924.00 83.03 10.38 96.96 MIR30D-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362283.1 ENST00000362283.1_6_25_+ 6–25 1186.00 7.07 0.88 73.07 MIR30D-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362291.1 ENST00000362291.1_15_35_+ 15–35 1015.00 82.92 0.76 100.0 MIR126-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362291.1 ENST00000362291.1_52_73_+ 52–73 163.00 13.32 0.12 96.45 MIR126-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 120.00 32.00 0.09 100.0 MIR374A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362307.1 ENST00000362307.1_8_29_+ 8–29 6569.00 77.51 4.90 100.0 MIR31-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 283.00 0.01 0.21 100.0 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 5741.00 0.24 4.28 62.06 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 141.00 0.01 0.11 100.0 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 3490.47 0.14 2.60 42.75 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 1166.00 0.05 0.87 70.16 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_1_32_+ 1–32 338.00 0.01 0.25 66.8 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_58_95_+ 58–95 1153.43 0.05 0.86 35.87 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 6311.33 0.26 4.70 59.1 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_79_95_+ 79–95 1357.00 0.06 1.01 53.07 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_12_95_+ 12–95 3129.00 0.13 2.33 72.75 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_56_95_+ 56–95 2611.77 0.11 1.95 58.97 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 7583.00 0.31 5.65 60.66 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 138.00 0.01 0.10 100.0 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 9427.00 0.39 7.03 85.83 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 17261.00 0.72 12.87 89.51 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 820.00 0.03 0.61 72.95 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_20_95_+ 20–95 3380.00 0.14 2.52 39.88 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 2138319.00 88.78 1593.79 99.91 RNA5S12-201 rRNA smooth muscle cell (In vitro differentiated cells)