ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 5.00 0.00 0.00 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 63262.00 6.27 47.15 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 39467.00 3.91 29.42 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 965.00 0.50 0.72 100.0 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 70259.00 36.42 52.37 98.41 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 156.00 0.08 0.12 100.0 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 16918.00 8.77 12.61 100.0 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 31735.00 16.45 23.65 100.0 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 36581.00 18.96 27.27 97.89 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 2585.00 1.40 1.93 23.5 ENST00000655317 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 34888.00 18.91 26.00 100.0 ENST00000655317 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 14532.00 7.88 10.83 81.72 ENST00000655317 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 23526.00 12.75 17.54 100.0 ENST00000655317 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 1706.00 2.64 1.27 36.95 LINC01962-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 53362.00 82.43 39.77 100.0 LINC01962-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 449.00 0.69 0.33 100.0 LINC01962-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 18384.00 26.11 13.70 98.62 SNHG14-241 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 11648.00 95.19 8.68 100.0 MEG8-228 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 4917.00 20.36 3.66 100.0 SNHG14-254 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 8707.00 9.76 6.49 100.0 SNHG14-261 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 57177.00 64.07 42.62 92.82 SNHG14-261 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 116.00 0.27 0.09 100.0 LIMD1-AS1-204 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 9749.00 22.39 7.27 100.0 LIMD1-AS1-204 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 4696.00 10.78 3.50 83.74 LIMD1-AS1-204 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 27315.00 88.36 20.36 92.65 MIR99AHG-262 lncRNA smooth muscle cell (In vitro differentiated cells)