ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 2989.00 0.12 2.23 67.47 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 40529.00 1.58 30.21 92.61 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 375.00 0.01 0.28 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 379.00 0.01 0.28 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 3830.00 0.15 2.85 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1707959.00 66.53 1273.02 99.82 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1124.00 0.04 0.84 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 13542.00 0.53 10.09 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 4387.00 0.17 3.27 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 3019.00 0.12 2.25 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 11042.00 0.43 8.23 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 35.00 0.00 0.03 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 599.00 0.02 0.45 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1052.00 0.04 0.78 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 9003.00 0.35 6.71 74.52 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 11419.00 0.44 8.51 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 54392.00 2.12 40.54 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 56268.00 2.19 41.94 98.12 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 153.00 0.01 0.11 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 19739.00 0.77 14.71 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 217315.00 8.46 161.98 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 4.00 0.00 0.00 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 1783.00 0.07 1.33 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 221.00 5.27 0.16 100.0 FTX-219 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 2747.00 65.55 2.05 88.1 FTX-219 lncRNA smooth muscle cell (In vitro differentiated cells)