ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 353.00 53.65 0.26 100.0 DMRT2-209 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 97.00 14.74 0.07 100.0 DMRT2-209 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 390.00 8.99 0.29 100.0 SNORD98-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 3131.00 72.14 2.33 100.0 SNORD98-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 107387.82 68.51 80.04 70.37 MIR106AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 6.92 0.00 0.01 30.1 MIR106AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 3.00 0.00 0.00 100.0 MIR106AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 13.63 0.01 0.01 59.27 MIR106AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 59.00 6.12 0.04 100.0 MEG8-222 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 217.00 22.51 0.16 100.0 MEG8-222 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 28848.00 8.68 21.50 97.05 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 127606.00 38.41 95.11 97.18 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 79793.00 24.02 59.47 100.0 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 40249.00 12.11 30.00 96.63 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 468.00 0.14 0.35 100.0 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 3961.00 1.19 2.95 47.75 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 10329.00 3.11 7.70 83.95 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 4637.00 1.40 3.46 54.34 SNHG14-224 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 5357.25 5.33 3.99 64.22 5S_rRNA.20-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 8607.00 23.82 6.42 100.0 HSPA9-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 15535.00 42.99 11.58 71.15 HSPA9-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 39405.00 31.63 29.37 100.0 DNM3OS-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 342192.00 13.33 255.05 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 567.00 0.02 0.42 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 4821.00 0.19 3.59 100.0 GAS5-230 retained intron smooth muscle cell (In vitro differentiated cells)