ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 2585.00 28.10 1.93 100.0 ENST00000570843 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 16.00 23.88 0.01 100.0 MIR497HG-207 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 152488.00 98.14 113.66 99.01 MIR22HG-212 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 551.00 0.43 0.41 51.79 SNORD53B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 513.00 0.40 0.38 48.21 SNORD53B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 115585.00 89.23 86.15 91.34 SNORD53B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 112.00 55.45 0.08 100.0 ENST00000578036 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 7831.00 86.39 5.84 100.0 RPL23A-207 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 3847.00 94.68 2.87 100.0 MIR744-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 44.00 56.41 0.03 100.0 MIR378C-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 12.00 14.81 0.01 16.9 MIR142HG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 6.00 7.41 0.00 8.45 MIR142HG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 80.00 0.16 0.06 100.0 SNORD3C-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 634.33 0.03 0.47 66.56 RPL23A-208 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 349.92 0.02 0.26 49.15 RPL23A-208 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1630331.00 76.52 1215.16 86.8 RPL23A-208 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 492335.00 23.11 366.96 91.22 RPL23A-208 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 4.00 0.95 0.00 100.0 MIR133A1HG-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 280342.00 57.25 208.95 96.68 RPL17-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 26401.00 5.39 19.68 50.87 RPL17-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 31896.00 6.51 23.77 33.41 RPL17-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1912.00 0.39 1.43 100.0 RPL17-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 126499.00 25.83 94.29 95.68 RPL17-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 81888.00 32.16 61.04 100.0 RPL17-214 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 68371.47 26.85 50.96 42.68 RPL17-214 retained intron smooth muscle cell (In vitro differentiated cells)