ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 15778.00 49.17 11.76 100.0 ENST00000554988 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 261.00 0.52 0.19 100.0 SNHG14-220 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 23108.00 45.71 17.22 100.0 SNHG14-220 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 23699.00 46.88 17.66 100.0 SNHG14-220 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 493.00 0.98 0.37 100.0 SNHG14-220 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 2096.00 99.01 1.56 100.0 TEKT4P2-201 transcribed unprocessed pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 3138.00 0.91 2.34 100.0 RPL4-202 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 5940.00 1.73 4.43 100.0 RPL4-202 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 320139.00 93.08 238.61 98.2 RPL4-202 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1140.00 0.33 0.85 100.0 RPL4-202 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 40.00 0.01 0.03 100.0 RPL4-202 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 1150.00 0.35 0.86 100.0 ENST00000563103 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 822.00 1.92 0.61 100.0 RPL4-207 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 34722.00 80.99 25.88 100.0 RPL4-207 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 11996.00 54.79 8.94 82.23 ENST00000565336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 2014.00 9.20 1.50 46.34 ENST00000565336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 276263.00 85.15 205.91 89.3 RBMX-210 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 5521.00 1.70 4.12 100.0 RBMX-210 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 706.00 0.22 0.53 100.0 RBMX-210 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1105.00 0.34 0.82 100.0 RBMX-210 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 7708.00 37.64 5.75 100.0 RPL4-214 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 4880.00 23.83 3.64 100.0 RPL4-214 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 187.00 0.89 0.14 100.0 POLG-DT-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 4979.77 23.73 3.71 63.83 POLG-DT-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 4480.27 21.35 3.34 52.34 POLG-DT-202 lncRNA smooth muscle cell (In vitro differentiated cells)