ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 30041.00 76.59 22.39 90.84 RNY4P18-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 64869.00 81.29 48.35 100.0 SNORD90-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 10463.00 13.11 7.80 58.17 SNORD90-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 1316.00 0.76 0.98 100.0 SNORD69-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 787.00 0.45 0.59 100.0 SNORD69-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 1218.00 0.70 0.91 100.0 SNORD69-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 166133.00 95.72 123.83 100.0 SNORD69-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 11258.00 61.74 8.39 68.53 SNORD70-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 20691.00 74.09 15.42 85.35 B4GALNT2-202 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 671.00 2.40 0.50 100.0 B4GALNT2-202 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 1133.00 81.39 0.84 100.0 NDE1-202 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 103.00 67.32 0.08 100.0 MIR450B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 422.00 54.59 0.31 100.0 MIR887-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 78.00 91.76 0.06 100.0 MIR889-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 7786.00 77.42 5.80 100.0 SNORD111-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 4606.00 69.24 3.43 86.66 SNORD88A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 70.00 94.59 0.05 100.0 MIR548K-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 1280.00 74.20 0.95 100.0 MIR320B2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 101.00 89.38 0.08 100.0 MIR1271-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 542.00 0.29 0.40 100.0 SNORD100-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 181515.00 95.74 135.29 100.0 SNORD100-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 2499.00 1.32 1.86 100.0 SNORD100-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 574.00 0.30 0.43 100.0 SNORD100-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 2009.00 37.87 1.50 100.0 SNORD111B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 508.00 6.61 0.38 100.0 RNU2-36P-201 snRNA smooth muscle cell (In vitro differentiated cells)