ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 776.00 10.09 0.58 100.0 RNU2-36P-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 934.00 0.29 0.70 100.0 SNORD19C-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 314824.00 97.38 234.65 98.85 SNORD19C-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 18805.00 3.21 14.02 100.0 SNORD12B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 1315.00 0.22 0.98 100.0 SNORD12B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 543342.00 92.80 404.98 99.04 SNORD12B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 16.00 1.02 0.01 100.0 Y_RNA.609-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 176.00 22.56 0.13 100.0 Y_RNA.612-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 4716.00 0.94 3.52 100.0 SNORD71-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 205.00 0.04 0.15 100.0 SNORD71-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 491180.00 97.82 366.10 99.47 SNORD71-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 890.00 22.92 0.66 69.05 MIR194-2HG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 2822.00 72.68 2.10 88.99 MIR194-2HG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 1885.00 5.45 1.40 100.0 LINC01783-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 59.00 67.82 0.04 100.0 RPS7P15-201 processed pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 3548.00 16.95 2.64 52.72 SNORD62B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 5712.00 27.28 4.26 100.0 SNORD62B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 1356.00 6.48 1.01 100.0 SNORD62B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 638.00 3.05 0.48 100.0 SNORD62B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 36.00 0.17 0.03 100.0 SNORD62B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 460.00 70.02 0.34 100.0 MRPL32-203 nonsense mediated decay smooth muscle cell (In vitro differentiated cells)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 24.00 64.86 0.02 100.0 ENST00000436739 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 51.00 0.16 0.04 100.0 TMEM107-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 271.00 0.85 0.20 100.0 TMEM107-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 4004.00 12.54 2.98 46.97 TMEM107-204 protein coding smooth muscle cell (In vitro differentiated cells)