ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 1476.00 1.08 1.10 88.54 MT-TE-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 3.00 0.00 0.00 100.0 MT-TE-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 88791.00 64.70 66.18 81.15 MT-TE-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 191.00 0.14 0.14 21.06 MT-TE-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 2285.00 1.66 1.70 100.0 MT-TE-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 141.00 39.83 0.11 100.0 MIR196A1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 1163.00 4.38 0.87 100.0 MT-RNR1-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 11658.00 43.95 8.69 100.0 MT-RNR1-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 355.00 66.23 0.26 100.0 MIR454-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 363.00 53.70 0.27 100.0 MIR501-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 2605.00 91.28 1.94 100.0 MIR769-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 555.00 74.20 0.41 100.0 KRTAP19-1-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 160.00 26.02 0.12 100.0 MIR708-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 1180.00 85.45 0.88 100.0 MIR509-3-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 4.00 80.00 0.00 100.0 MIR543-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 1333.00 95.90 0.99 100.0 MIR301B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 944.00 54.63 0.70 72.23 RNU1-82P-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 382.00 2.47 0.28 100.0 SNORD66-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 3354.00 21.73 2.50 100.0 SNORD66-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 3484.00 22.57 2.60 100.0 SNORD66-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 2072.00 13.42 1.54 76.97 SNORD66-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 407.00 55.15 0.30 100.0 U3.17-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 2961.00 37.84 2.21 100.0 SNORD17-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 3415.00 69.23 2.55 100.0 SNORD72-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 9350.00 80.45 6.97 100.0 SNORD70B-201 snoRNA smooth muscle cell (In vitro differentiated cells)