ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 2870.00 45.20 2.14 100.0 MT-TI-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387372.1 ENST00000387372.1_1_55_+ 1–55 474.00 3.38 0.35 100.0 MT-TQ-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387372.1 ENST00000387372.1_1_36_+ 1–36 4741.00 33.80 3.53 83.48 MT-TQ-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387372.1 ENST00000387372.1_1_32_+ 1–32 1459.24 10.40 1.09 44.02 MT-TQ-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 1648.43 11.75 1.23 65.62 MT-TQ-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387377.1 ENST00000387377.1_1_31_+ 1–31 823.00 33.20 0.61 79.06 MT-TM-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387377.1 ENST00000387377.1_1_51_+ 1–51 471.00 19.00 0.35 100.0 MT-TM-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387405.1 ENST00000387405.1_1_24_+ 1–24 142.00 23.59 0.11 100.0 MT-TC-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387409.1 ENST00000387409.1_1_56_+ 1–56 439.00 0.72 0.33 100.0 MT-TY-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387409.1 ENST00000387409.1_1_37_+ 1–37 2853.00 4.68 2.13 75.18 MT-TY-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387409.1 ENST00000387409.1_1_32_+ 1–32 3542.00 5.81 2.64 80.5 MT-TY-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387409.1 ENST00000387409.1_1_50_+ 1–50 3.00 0.00 0.00 100.0 MT-TY-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387409.1 ENST00000387409.1_1_28_+ 1–28 818.00 1.34 0.61 100.0 MT-TY-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387409.1 ENST00000387409.1_1_65_+ 1–65 48845.00 80.10 36.41 100.0 MT-TY-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387419.1 ENST00000387419.1_1_51_+ 1–51 23.00 8.58 0.02 100.0 MT-TD-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387421.1 ENST00000387421.1_1_31_+ 1–31 15.00 0.14 0.01 100.0 MT-TK-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387421.1 ENST00000387421.1_1_58_+ 1–58 3741.00 34.99 2.79 100.0 MT-TK-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387421.1 ENST00000387421.1_1_52_+ 1–52 3737.00 34.95 2.79 100.0 MT-TK-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387421.1 ENST00000387421.1_1_28_+ 1–28 113.00 1.06 0.08 100.0 MT-TK-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387449.1 ENST00000387449.1_1_26_+ 1–26 368.00 14.06 0.27 100.0 MT-TS2-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387449.1 ENST00000387449.1_1_53_+ 1–53 157.00 6.00 0.12 100.0 MT-TS2-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387449.1 ENST00000387449.1_1_20_+ 1–20 473.00 18.07 0.35 77.54 MT-TS2-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387456.1 ENST00000387456.1_1_31_+ 1–31 111.00 2.16 0.08 100.0 MT-TL2-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 1476.00 1.08 1.10 88.54 MT-TE-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 191.00 0.14 0.14 21.06 MT-TE-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)