ENCFF211GIU

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR183YQY
Description: Part of ENCODE experiment ENCSR183YQY. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 412.00 2.21 2.01 12.67 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 25.00 0.13 0.12 100.0 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 13917.00 74.53 67.96 99.02 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 2350.00 12.59 11.48 99.03 RPL17-211 retained intron transverse colon (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 40.00 36.36 0.20 41.67 ENST00000582320 lncRNA transverse colon (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 2.00 1.82 0.01 100.0 ENST00000582320 lncRNA transverse colon (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 2.00 1.82 0.01 100.0 ENST00000582320 lncRNA transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1169.00 23.81 5.71 100.0 RPL17-214 retained intron transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 1431.28 29.16 6.99 50.19 RPL17-214 retained intron transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 1512.39 30.81 7.39 49.57 RPL17-214 retained intron transverse colon (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 7.00 0.00 0.03 100.0 SNORD43-201 snoRNA transverse colon (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 163009.00 99.13 796.05 99.91 SNORD43-201 snoRNA transverse colon (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 57.00 30.48 0.28 100.0 MIR151B-201 miRNA transverse colon (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 135.00 1.73 0.66 100.0 SNORD3A-201 snoRNA transverse colon (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 975.00 73.09 4.76 100.0 SNORD92-201 snoRNA transverse colon (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1712.00 50.49 8.36 100.0 NSRP1-214 protein coding transverse colon (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1137.00 33.53 5.55 83.36 NSRP1-214 protein coding transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 186.00 3.76 0.91 100.0 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1042.00 21.07 5.09 94.9 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 923.00 18.67 4.51 87.16 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1273.00 25.74 6.22 95.64 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 334.00 6.75 1.63 73.25 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 1178.00 58.61 5.75 100.0 ODAD3-204 nonsense mediated decay transverse colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 955.00 4.05 4.66 100.0 VMP1-217 retained intron transverse colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 216.00 0.92 1.05 100.0 VMP1-217 retained intron transverse colon (Tissue)