ENCFF211GIU

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR183YQY
Description: Part of ENCODE experiment ENCSR183YQY. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 13825.00 58.66 67.51 66.18 VMP1-217 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 102.00 0.08 0.50 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 69088.54 57.28 337.39 62.52 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 50637.72 41.99 247.29 42.62 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 333.00 0.28 1.63 84.52 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 41.00 0.03 0.20 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1.00 0.00 0.00 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 1.00 100.00 0.00 100.0 ENST00000597420 lncRNA transverse colon (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 49.00 9.80 0.24 100.0 RPS11-206 retained intron transverse colon (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 139.00 27.80 0.68 100.0 RPS11-206 retained intron transverse colon (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1704339.00 81.28 8323.12 82.39 CARMN-209 lncRNA transverse colon (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 183.00 9.15 0.89 100.0 ENST00000602478 lncRNA transverse colon (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 640.00 59.31 3.13 100.0 PPFIA1P1-201 processed pseudogene transverse colon (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 256.00 37.10 1.25 100.0 SNORD114-21-201 snoRNA transverse colon (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 234.00 33.91 1.14 100.0 SNORD114-21-201 snoRNA transverse colon (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 26.00 63.41 0.13 100.0 SNORD115-40-201 snoRNA transverse colon (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 942.00 95.73 4.60 100.0 MIR98-201 miRNA transverse colon (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 876.00 88.22 4.28 100.0 SNORD113-5-201 snoRNA transverse colon (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 118.00 96.72 0.58 100.0 MIR15A-201 miRNA transverse colon (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 7.00 70.00 0.03 100.0 MIR376C-201 miRNA transverse colon (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 113.00 38.44 0.55 100.0 SNHG21-206 retained intron transverse colon (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 216.00 86.06 1.05 100.0 SNORD11B-201 snoRNA transverse colon (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 263.00 56.32 1.28 100.0 SNORD91B-201 snoRNA transverse colon (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 1359.00 43.10 6.64 52.78 SNORD91A-201 snoRNA transverse colon (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 10544.00 48.73 51.49 98.06 MIR486-1-201 miRNA transverse colon (Tissue)