ENCFF195CBI

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR626GVP
Description: Part of ENCODE experiment ENCSR626GVP. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 4.00 0.00 0.02 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 2841.00 0.25 14.15 98.96 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 2916.91 0.26 14.53 69.04 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 3169.00 0.28 15.78 81.13 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 819399.00 72.11 4081.37 99.67 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 505.00 0.04 2.52 85.45 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 53330.00 4.69 265.63 98.88 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 3073.00 0.27 15.31 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 65980.00 5.81 328.64 99.95 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 1323.00 0.12 6.59 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 33.00 0.00 0.16 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 417.00 0.04 2.08 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 703.00 0.06 3.50 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 278.00 0.02 1.38 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 19487.00 1.71 97.06 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 201.00 0.02 1.00 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 857.00 0.08 4.27 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 52210.00 4.59 260.05 77.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 4872.00 0.43 24.27 87.99 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 8.00 0.00 0.04 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 37.00 0.00 0.18 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 13822.00 1.22 68.85 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 2148.00 0.19 10.70 73.31 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1368.80 0.12 6.82 32.4 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 642.00 0.06 3.20 100.0 SNHG1-248 lncRNA testis (Tissue)