ENCFF195CBI

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR626GVP
Description: Part of ENCODE experiment ENCSR626GVP. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 2250.00 0.20 11.21 55.42 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1269.00 0.11 6.32 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 340.00 0.03 1.69 100.0 SNHG1-248 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 2541.00 10.70 12.66 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 279.01 1.18 1.39 89.72 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 689.00 2.90 3.43 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 318.00 1.34 1.58 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 24.52 0.10 0.12 7.84 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 8917.00 37.55 44.41 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 111.00 0.47 0.55 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1032.00 4.35 5.14 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 1211.00 5.10 6.03 100.0 SNHG5-273 lncRNA testis (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 4450.00 0.63 22.17 47.59 MEG8-251 lncRNA testis (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 673691.00 95.22 3355.61 99.67 MEG8-251 lncRNA testis (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 5480.00 0.77 27.30 56.39 MEG8-251 lncRNA testis (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 13483.00 1.91 67.16 91.08 MEG8-251 lncRNA testis (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 59.00 0.01 0.29 100.0 MEG8-251 lncRNA testis (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 31.00 1.62 0.15 100.0 SNHG14-336 lncRNA testis (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 39.00 33.33 0.19 100.0 FMN2-209 protein coding CDS not defined testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 12.00 0.36 0.06 100.0 LINC02739-203 lncRNA testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 50.00 1.51 0.25 32.47 LINC02739-203 lncRNA testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 52.00 1.57 0.26 100.0 LINC02739-203 lncRNA testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 413.00 12.48 2.06 100.0 LINC02739-203 lncRNA testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 7.00 0.21 0.03 100.0 LINC02739-203 lncRNA testis (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 104.00 3.14 0.52 67.53 LINC02739-203 lncRNA testis (Tissue)