ENCFF195CBI

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR626GVP
Description: Part of ENCODE experiment ENCSR626GVP. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 9.00 45.00 0.04 100.0 ENST00000436739 lncRNA testis (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 110.00 3.45 0.55 100.0 TMEM107-204 protein coding testis (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 23.00 0.72 0.11 23.23 TMEM107-204 protein coding testis (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1854.00 58.10 9.23 92.84 TMEM107-204 protein coding testis (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1584.00 82.67 7.89 100.0 SNHG16-201 lncRNA testis (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 56390.00 79.69 280.87 91.86 SNORD105B-201 snoRNA testis (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 281.00 26.92 1.40 39.58 SNORD121B-201 snoRNA testis (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 127.00 18.59 0.63 100.0 SNORD127-201 snoRNA testis (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 8121.00 93.65 40.45 100.0 SNORD42B-201 snoRNA testis (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 25.00 1.26 0.12 100.0 RNY4P25-201 misc RNA testis (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 377.00 81.96 1.88 100.0 SNORD121A-201 snoRNA testis (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 3291.00 97.28 16.39 100.0 SNORD126-201 snoRNA testis (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 811.00 50.91 4.04 100.0 SNHG12-201 retained intron testis (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 1958.00 95.79 9.75 100.0 SMC1A-204 retained intron testis (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 174.00 15.88 0.87 100.0 DDX39B-219 retained intron testis (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 391.00 35.68 1.95 100.0 DDX39B-219 retained intron testis (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 877.00 77.61 4.37 100.0 RPS8-206 protein coding CDS not defined testis (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 2200.00 23.28 10.96 99.86 RPL13-207 retained intron testis (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 3120.00 33.02 15.54 100.0 RPL13-207 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 726.00 0.42 3.62 43.45 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 455.00 0.26 2.27 100.0 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 7794.00 4.50 38.82 60.81 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 360.00 0.21 1.79 42.25 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1802.00 1.04 8.98 50.15 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 120.00 0.07 0.60 34.29 EIF4A2-219 retained intron testis (Tissue)