ENCFF195CBI

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR626GVP
Description: Part of ENCODE experiment ENCSR626GVP. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 360.00 0.21 1.79 42.25 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 128768.00 74.33 641.38 98.55 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 726.00 0.42 3.62 43.45 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 455.00 0.26 2.27 100.0 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 7794.00 4.50 38.82 60.81 EIF4A2-219 retained intron testis (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 123.00 0.07 0.61 41.84 EIF4A2-219 retained intron testis (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 144.00 22.97 0.72 100.0 RPL7A-206 protein coding CDS not defined testis (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 84.00 13.40 0.42 100.0 RPL7A-206 protein coding CDS not defined testis (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 29.00 4.63 0.14 100.0 RPL7A-206 protein coding CDS not defined testis (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 9986.00 3.43 49.74 95.96 RPL21-209 retained intron testis (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 276559.00 94.93 1377.52 98.1 RPL21-209 retained intron testis (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 4.00 0.00 0.02 100.0 RPL21-209 retained intron testis (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 2502.00 0.86 12.46 100.0 RPL21-209 retained intron testis (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 551.00 0.19 2.74 100.0 RPL21-209 retained intron testis (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 1.00 12.50 0.00 100.0 GABRE-209 retained intron testis (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 907.00 26.40 4.52 100.0 RPL13A-212 retained intron testis (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 89.00 2.59 0.44 100.0 RPL13A-212 retained intron testis (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 70.00 2.04 0.35 100.0 RPL13A-212 retained intron testis (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 245.00 18.20 1.22 100.0 RPL7A-207 protein coding CDS not defined testis (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 188.00 13.97 0.94 100.0 RPL7A-207 protein coding CDS not defined testis (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 59.00 74.68 0.29 100.0 RGS11-208 retained intron testis (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 16397.00 80.59 81.67 93.59 NOP56-217 protein coding CDS not defined testis (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 250.00 1.12 1.25 38.28 RABGGTB-213 protein coding CDS not defined testis (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 14912.00 66.82 74.28 93.06 RABGGTB-213 protein coding CDS not defined testis (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 474.00 2.12 2.36 100.0 RABGGTB-213 protein coding CDS not defined testis (Tissue)