ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 16736.00 5.37 13.80 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 151.00 0.05 0.12 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 959.00 0.31 0.79 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 140.00 0.04 0.12 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 25.00 0.01 0.02 64.1 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 40.00 0.01 0.03 54.79 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 259676.00 87.63 214.17 97.21 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 9921.00 21.98 8.18 91.08 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 128.00 81.01 0.11 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 7.00 2.45 0.01 50.0 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 12.00 63.16 0.01 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 13151.00 33.82 10.85 64.94 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 7099.00 18.26 5.85 35.06 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 4441.00 11.42 3.66 88.5 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 112.25 1.71 0.09 3.72 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 3130.62 47.77 2.58 96.03 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 258.00 3.94 0.21 65.48 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 1512.00 68.73 1.25 90.7 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 2.00 0.14 0.00 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 895.00 6.70 0.74 70.42 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 874.00 2.85 0.72 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 1156.00 1.69 0.95 59.8 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 51.00 8.87 0.04 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 2937.00 24.14 2.42 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 21703.00 55.33 17.90 98.01 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA neural progenitor cell (In vitro differentiated cells)