ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 12.00 0.32 0.01 14.81 RNA5SP370-201 rRNA pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 69.00 13.12 0.06 100.0 SNORA31-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 205.00 5.55 0.17 100.0 RNA5SP389-201 rRNA pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 37.00 1.00 0.03 86.05 RNA5SP389-201 rRNA pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 28.00 0.76 0.02 75.68 RNA5SP389-201 rRNA pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 24.00 0.65 0.02 100.0 RNA5SP389-201 rRNA pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 1933.00 7.35 1.59 77.38 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 2492.00 9.47 2.06 79.16 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 719.20 2.73 0.59 45.81 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 2842.00 10.80 2.34 83.12 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 1107.00 4.21 0.91 75.41 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 327.00 1.24 0.27 100.0 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 2500.00 9.50 2.06 77.16 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 810.00 3.08 0.67 42.32 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 456.32 1.73 0.38 53.18 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 916.00 3.48 0.76 55.58 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 423.00 1.61 0.35 100.0 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 934.85 3.55 0.77 68.39 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 90.00 0.34 0.07 100.0 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 446.22 1.70 0.37 38.57 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1153.00 4.38 0.95 37.61 RNU5A-1-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 456.00 64.86 0.38 100.0 SNORD114-14-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 63.00 2.27 0.05 100.0 SNORD104-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 11.00 0.40 0.01 100.0 SNORD104-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 473.00 80.72 0.39 100.0 SNORD115-9-201 snoRNA neural progenitor cell (In vitro differentiated cells)