ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 664.00 74.52 0.55 100.0 B4GALT1-203 nonsense mediated decay neural progenitor cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 219.00 16.26 0.18 100.0 ENST00000722183 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 93.00 6.90 0.08 69.4 ENST00000722183 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 67.00 4.97 0.06 100.0 ENST00000722183 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 88.00 77.88 0.07 100.0 MIR34BHG-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 113560.00 83.46 93.66 88.79 THBS3-AS1-228 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 21.00 29.58 0.02 100.0 MIR200CHG-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 19.00 26.76 0.02 100.0 MIR200CHG-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 16040.00 69.47 13.23 100.0 SNHG16-266 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 91.00 0.39 0.08 100.0 SNHG16-266 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 91.00 0.39 0.08 100.0 SNHG16-266 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 53.00 0.23 0.04 100.0 SNHG16-266 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 7.00 28.00 0.01 100.0 MEG8-261 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 183.00 26.75 0.15 100.0 NR2F2-AS1-327 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 261.00 3.42 0.22 45.87 ENST00000747675 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 2794.00 36.66 2.30 100.0 ENST00000747675 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 128.00 1.68 0.11 32.9 ENST00000747675 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 180.00 2.36 0.15 40.82 ENST00000747675 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 535.00 7.02 0.44 100.0 ENST00000747675 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 6503.00 30.40 5.36 86.06 SNHG26-250 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 7544.00 35.27 6.22 76.76 SNHG26-250 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 159.00 16.16 0.13 100.0 LINC02422-207 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 206.00 2.04 0.17 100.0 ENST00000753088 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 13.00 0.13 0.01 100.0 ENST00000753088 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 472.34 1.65 0.39 32.18 ENST00000756336 lncRNA neural progenitor cell (In vitro differentiated cells)