ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 1.00 14.29 0.00 100.0 MIR99AHG-370 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 5762.00 98.33 4.75 100.0 HPS4-237 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 34.00 60.71 0.03 100.0 MEG8-253 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 4.00 5.80 0.00 100.0 MEG9-206 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 22.00 31.88 0.02 100.0 MEG9-206 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 974.00 13.41 0.80 100.0 DNAJC5-203 nonsense mediated decay neural progenitor cell (In vitro differentiated cells)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 470.00 17.39 0.39 100.0 ENST00000707189 TEC neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 24470.00 6.77 20.18 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 122457.00 33.88 101.00 41.9 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 114.00 0.03 0.09 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 58.00 0.02 0.05 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 194755.00 53.89 160.63 60.71 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 601.00 0.17 0.50 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 1455.00 0.40 1.20 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 668.00 0.18 0.55 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 1991.00 0.55 1.64 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 6753.00 0.84 5.57 100.0 SNHG32-223 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 147.00 0.02 0.12 100.0 SNHG32-223 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 169.00 0.02 0.14 100.0 SNHG32-223 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 21804.00 2.72 17.98 94.92 SNHG32-223 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 767703.00 95.79 633.17 100.0 SNHG32-223 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 178201.00 94.46 146.97 95.83 SNHG32-227 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 66.00 0.03 0.05 100.0 SNHG32-227 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 79.00 0.04 0.07 100.0 SNHG32-227 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 72.00 0.04 0.06 100.0 SNHG32-227 lncRNA neural progenitor cell (In vitro differentiated cells)