ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1.00 33.33 0.00 100.0 MIR142HG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 1797.00 6.07 1.48 100.0 SNORD3C-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 13937.04 1.10 11.49 63.5 RPL23A-208 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 8408.53 0.66 6.94 49.65 RPL23A-208 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 296521.00 23.43 244.56 53.73 RPL23A-208 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 933268.00 73.74 769.72 96.02 RPL23A-208 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 208849.00 28.08 172.25 99.25 RPL17-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 2598.00 0.35 2.14 16.29 RPL17-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 3731.00 0.50 3.08 9.82 RPL17-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1946.00 0.26 1.60 100.0 RPL17-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 511519.00 68.78 421.88 99.54 RPL17-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 76200.00 40.66 62.85 100.0 RPL17-214 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 70376.49 37.55 58.04 68.84 RPL17-214 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 27572.85 14.71 22.74 31.05 RPL17-214 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 83.00 0.00 0.07 100.0 SNORD43-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 1736853.00 99.32 1432.49 99.68 SNORD43-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 220.00 0.01 0.18 100.0 SNORD43-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 60.00 63.83 0.05 100.0 MIR151B-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 180.00 0.56 0.15 100.0 SNORD3A-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 10794.00 89.25 8.90 100.0 SNORD92-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 3363.00 35.34 2.77 100.0 NSRP1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 5153.00 54.15 4.25 92.66 NSRP1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 17.00 3.26 0.01 77.27 MIR23AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 236.00 45.21 0.19 100.0 MIR23AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 26.00 4.98 0.02 78.79 MIR23AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)