ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 222.00 0.02 0.18 100.0 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 338.00 0.03 0.28 77.7 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 56242.00 85.92 46.39 100.0 HSPA8-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 107.00 5.29 0.09 100.0 SCARNA9-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 379869.00 97.97 313.30 100.0 TAF1D-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 1047.00 0.27 0.86 100.0 TAF1D-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 453.00 0.40 0.37 100.0 HSPA8-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 104753.00 92.15 86.40 100.0 HSPA8-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 504.00 0.44 0.42 100.0 HSPA8-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 535.00 23.73 0.44 100.0 RPS2-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 3.00 30.00 0.00 75.0 ENST00000548801 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 35.00 0.69 0.03 100.0 ENST00000554988 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 1812.00 35.49 1.49 100.0 ENST00000554988 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 563.00 11.03 0.46 100.0 ENST00000554988 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 5193.00 4.31 4.28 100.0 SNHG14-220 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 169.00 0.14 0.14 100.0 SNHG14-220 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 43578.00 36.17 35.94 100.0 SNHG14-220 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 61991.00 51.46 51.13 100.0 SNHG14-220 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 334.00 99.40 0.28 100.0 TEKT4P2-201 transcribed unprocessed pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1743.00 0.59 1.44 100.0 RPL4-202 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 4056.00 1.37 3.35 100.0 RPL4-202 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 118.00 0.04 0.10 100.0 RPL4-202 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 846.00 0.29 0.70 100.0 RPL4-202 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 277858.00 94.11 229.17 98.58 RPL4-202 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 924.00 2.73 0.76 100.0 ENST00000563103 lncRNA neural progenitor cell (In vitro differentiated cells)