ENCFF192PKY

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR961FIG
Description: Part of ENCODE experiment ENCSR961FIG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 325.00 1.47 1.96 68.13 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 740.00 3.35 4.46 15.26 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 31.00 0.14 0.19 100.0 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 17008.00 76.89 102.56 99.13 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 1021.00 4.62 6.16 95.51 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 254.00 28.57 1.53 36.81 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 22.00 2.47 0.13 100.0 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 30.00 3.37 0.18 100.0 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1367.00 12.76 8.24 100.0 RPL17-214 retained intron upper lobe of left lung (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 4711.55 44.00 28.41 59.66 RPL17-214 retained intron upper lobe of left lung (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 3233.45 30.19 19.50 39.66 RPL17-214 retained intron upper lobe of left lung (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 1.00 0.00 0.01 100.0 SNORD43-201 snoRNA upper lobe of left lung (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 307233.00 98.20 1852.67 99.94 SNORD43-201 snoRNA upper lobe of left lung (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 80.00 0.03 0.48 100.0 SNORD43-201 snoRNA upper lobe of left lung (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 57.00 32.20 0.34 100.0 MIR151B-201 miRNA upper lobe of left lung (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 2604.00 15.01 15.70 100.0 SNORD3A-201 snoRNA upper lobe of left lung (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 3848.00 35.43 23.20 100.0 NSRP1-214 protein coding upper lobe of left lung (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 4417.00 40.67 26.64 77.93 NSRP1-214 protein coding upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1340.00 18.52 8.08 95.04 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 799.00 11.04 4.82 79.74 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2584.00 35.71 15.58 97.03 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 420.00 5.80 2.53 60.09 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 24.00 8.08 0.14 100.0 ODAD3-204 nonsense mediated decay upper lobe of left lung (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 3810.00 9.35 22.97 100.0 VMP1-217 retained intron upper lobe of left lung (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 149.00 0.37 0.90 100.0 VMP1-217 retained intron upper lobe of left lung (Tissue)