ENCFF192PKY

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR961FIG
Description: Part of ENCODE experiment ENCSR961FIG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 22977.00 56.37 138.56 68.13 VMP1-217 retained intron upper lobe of left lung (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 892.00 32.34 5.38 100.0 C19orf48P-203 retained intron upper lobe of left lung (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 81.00 2.94 0.49 100.0 C19orf48P-203 retained intron upper lobe of left lung (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 704530.00 77.20 4248.43 78.83 CARMN-209 lncRNA upper lobe of left lung (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 2663.00 54.47 16.06 100.0 PPFIA1P1-201 processed pseudogene upper lobe of left lung (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 259.00 60.66 1.56 100.0 SNORD114-21-201 snoRNA upper lobe of left lung (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 86.00 20.14 0.52 100.0 SNORD114-21-201 snoRNA upper lobe of left lung (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 2814.00 97.00 16.97 100.0 MIR98-201 miRNA upper lobe of left lung (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 55.00 67.90 0.33 100.0 SNORD113-5-201 snoRNA upper lobe of left lung (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 174.00 92.55 1.05 100.0 MIR15A-201 miRNA upper lobe of left lung (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 806.00 60.65 4.86 100.0 SNHG21-206 retained intron upper lobe of left lung (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 428199.00 48.82 2582.11 98.34 MIR486-1-201 miRNA upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 1608.00 31.60 9.70 100.0 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 159.00 3.12 0.96 100.0 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 1760.00 34.58 10.61 100.0 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 305.00 5.99 1.84 56.27 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 2729.38 23.66 16.46 36.89 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 35.00 0.30 0.21 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 987.00 8.55 5.95 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 19.00 0.16 0.11 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 4436.32 38.45 26.75 59.96 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 4.00 100.00 0.02 100.0 MIR7974-201 miRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 136.00 0.73 0.82 100.0 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 886.00 4.78 5.34 79.18 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 66.00 0.36 0.40 100.0 U2.3-201 snRNA upper lobe of left lung (Tissue)